Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
UCEC rs34121369 chr4:57269591 T/TA 0.000117 173 23.8 19.17 23.13 KM Plot
UCEC rs34180883 chr14:77857190 G/A 6.09E-8 172 21.3 29.5 5.97 KM Plot
UCEC rs34187328 chr6:5110183 G/GT 3.2E-9 174 22.75 22.63 5.97 KM Plot
UCEC rs34320705 chr10:88766181 C/T 4.83E-5 168 25.87 23.57 21.83 KM Plot
UCEC rs34625710 chr5:77710293 G/A 2.59E-5 173 21.1 27.53 18.37 KM Plot
UCEC rs34639905 chr15:84747349 TA/T 7.65E-11 171 7.95 27.33 22.6 KM Plot
UCEC rs34690506 chr14:22307817 A/T 8.49E-5 171 22.72 20.17 10.93 KM Plot
UCEC rs34710867 chr14:22307631 T/A 8.49E-5 171 22.72 20.17 10.93 KM Plot
UCEC rs34723065 chr12:66122348 A/AAT 4.16E-7 172 22.57 22.8 10.33 KM Plot
UCEC rs3475 chr2:98272634 G/A 3.18E-10 171 24.07 19.1 2.4 KM Plot
UCEC rs34787589 chr12:66122232 G/A 4.16E-7 172 22.57 22.8 10.33 KM Plot
UCEC rs34902550 chr14:22317217 G/A 5.74E-5 168 21.6 22.38 11.53 KM Plot
UCEC rs35012626 chr14:22317301 A/G 5.74E-5 168 21.6 22.38 11.53 KM Plot
UCEC rs35131102 chr5:77725188 AT/A 2.57E-5 173 18.37 26.27 21.1 KM Plot
UCEC rs35171970 chr14:22306823 C/T 3.5E-5 172 22.08 22.57 11.53 KM Plot